{
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  "Package": "coffee",
  "Type": "Package",
  "Title": "Chronological Ordering for Fossils and Environmental Events",
  "Version": "0.5.0",
  "Authors@R": "c(\nperson(\"Maarten\", \"Blaauw\", email=\"maarten.blaauw@qub.ac.uk\", role=c(\"aut\", \"cre\"), comment=c(ORCID=\"0000-0002-5680-1515\")),\nperson(\"Marco A.\", \"Aquino Lopez\", email=\"aquino@cimat.mx\", role=c(\"aut\", \"ctb\"), comment=c(ORCID=\"0000-0002-5076-7205\")),\nperson(\"J. Andres\", \"Christen\", email=\"jac@cimat.mx\", role=c(\"aut\", \"ctb\", \"cph\"), comment=c(ORCID=\"0000-0002-5795-4345\")))",
  "Maintainer": "Maarten Blaauw <maarten.blaauw@qub.ac.uk>",
  "Description": "While individual calibrated radiocarbon dates can span\nseveral centuries, combining multiple dates together with any\nchronological constraints can make a chronology much more\nrobust and precise. This package uses Bayesian methods to\nenforce the chronological ordering of radiocarbon and other\ndates, for example for trees with multiple radiocarbon dates\nspaced at exactly known intervals (e.g., 10 annual rings). For\nmethods see Christen 2003 <doi:10.11141/ia.13.2>. Another\nexample is sites where the relative chronological position of\nthe dates is taken into account - the ages of dates further\ndown a site must be older than those of dates further up (Buck,\nKenworthy, Litton and Smith 1991\n<doi:10.1017/S0003598X00080534>; Nicholls and Jones 2001\n<doi:10.1111/1467-9876.00250>). The paper accompanying this R\npackage is Blaauw et al. 2024 <doi:10.1017/RDC.2024.56>.",
  "License": "GPL (>= 2)",
  "Encoding": "UTF-8",
  "URL": "https://github.com/Maarten14C/coffee",
  "RoxygenNote": "7.3.2",
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  "Language": "en-GB",
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  "Date/Publication": "2025-12-11 09:42:51 UTC",
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  "RemoteRef": "HEAD",
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  "Packaged": {
    "Date": "2026-06-05 07:43:57 UTC",
    "User": "root"
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  "Author": "Maarten Blaauw [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-5680-1515>),\nMarco A. Aquino Lopez [aut, ctb] (ORCID:\n<https://orcid.org/0000-0002-5076-7205>),\nJ. Andres Christen [aut, ctb, cph] (ORCID:\n<https://orcid.org/0000-0002-5795-4345>)",
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  "_published": "2026-06-05T07:53:00.283Z",
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    "message": "corrected quantile bug in save.summaries\n",
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    "description": "I'm a palaeoecologist with interests in chronology-building, especially by developing approaches to age-depth modelling of radiocarbon-dated cores. ",
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    "description": "I'm a palaeoecologist with interests in chronology-building, especially by developing approaches to age-depth modelling of radiocarbon-dated cores. "
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    "manual.pdf"
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  "_homeurl": "https://github.com/maarten14c/coffee",
  "_realowner": "maarten14c",
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    "rings",
    "scissors",
    "sim.rings",
    "sim.strat",
    "strat",
    "strat.cleanup",
    "thinner",
    "withinhpd"
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  "_help": [
    {
      "page": "ages.undated",
      "title": "Model ages between two dated levels",
      "topics": [
        "ages.undated"
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    },
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      "page": "draw.MCMCrings",
      "title": "plot the dates and model of a MCMC wiggle-match dated tree",
      "topics": [
        "draw.MCMCrings"
      ]
    },
    {
      "page": "draw.rings",
      "title": "plot the dates and model of a wiggle-match dated tree",
      "topics": [
        "draw.rings"
      ]
    },
    {
      "page": "draw.strat",
      "title": "plot the dates and model of chronologically ordered dated depths",
      "topics": [
        "draw.strat"
      ]
    },
    {
      "page": "IAT",
      "title": "calculate the Integrated Autocorrelation Time",
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    },
    {
      "page": "MCMCrings",
      "title": "MCMC wiggle-match C-14 dating of a tree",
      "topics": [
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    },
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      "page": "scissors",
      "title": "Remove the first n iterations.",
      "topics": [
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    },
    {
      "page": "sim.rings",
      "title": "Simulate the radiocarbon dating of tree-rings",
      "topics": [
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    },
    {
      "page": "sim.strat",
      "title": "Simulate the radiocarbon dating of random depths of a sediment which has accumulated over time.",
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      "title": "Remove .out files from a run",
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      "topics": [
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