Package: coffee 0.4.3

coffee: Chronological Ordering for Fossils and Environmental Events

While individual calibrated radiocarbon dates can span several centuries, combining multiple dates together with any chronological constraints can make a chronology much more robust and precise. This package uses Bayesian methods to enforce the chronological ordering of radiocarbon and other dates, for example for trees with multiple radiocarbon dates spaced at exactly known intervals (e.g., 10 annual rings). For methods see Christen 2003 <doi:10.11141/ia.13.2>. Another example is sites where the relative chronological position of the dates is taken into account - the ages of dates further down a site must be older than those of dates further up (Buck, Kenworthy, Litton and Smith 1991 <doi:10.1017/S0003598X00080534>; Nicholls and Jones 2001 <doi:10.1111/1467-9876.00250>). The paper accompanying this R package is Blaauw et al. 2024 <doi:10.1017/RDC.2024.56>.

Authors:Maarten Blaauw [aut, cre], Marco A. Aquino Lopez [aut, ctb], J. Andres Christen [aut, ctb, cph]

coffee_0.4.3.tar.gz
coffee_0.4.3.zip(r-4.5)coffee_0.4.3.zip(r-4.4)coffee_0.4.3.zip(r-4.3)
coffee_0.4.3.tgz(r-4.5-any)coffee_0.4.3.tgz(r-4.4-any)coffee_0.4.3.tgz(r-4.3-any)
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coffee.pdf |coffee.html
coffee/json (API)
NEWS

# Install 'coffee' in R:
install.packages('coffee', repos = c('https://maarten14c.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/maarten14c/coffee/issues

On CRAN:

Conda:

6.02 score 7 stars 6 scripts 462 downloads 6 mentions 14 exports 52 dependencies

Last updated 3 months agofrom:05b6a38bd2. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 23 2025
R-4.5-winOKFeb 23 2025
R-4.5-macOKFeb 23 2025
R-4.5-linuxOKFeb 23 2025
R-4.4-winOKFeb 23 2025
R-4.4-macOKFeb 23 2025
R-4.3-winOKFeb 23 2025
R-4.3-macOKFeb 23 2025

Exports:ages.undateddraw.MCMCringsdraw.ringsdraw.stratIATMCMCringsringsscissorssim.ringssim.stratstratstrat.cleanupthinnerwithinhpd

Dependencies:askpassclassclassIntclicolorspacecurldata.tableDBIe1071fansifarverggplot2gluegtablehttrisobandjsonliteKernSmoothlabelinglatticelifecyclemagrittrmapsMASSMatrixmgcvmimemunsellnlmeopensslpillarpkgconfigproxyR6RColorBrewerRcppricerintcalrlangrnaturalearths2scalessfsysterratibbleunitsutf8vctrsviridisLitewithrwk

coffee

Rendered fromcoffee.Rmdusingknitr::rmarkdownon Feb 23 2025.

Last update: 2024-12-06
Started: 2023-10-26